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RbowtieCuda

Bioc current

An R Wrapper for nvBowtie and nvBWT, a rewritten version of Bowtie2 for cuda

v1.4.3 · software · BSD_3_clause + file LICENSE
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Release Lineage

Entered 3.21 · Apr 16, 2025

Current · Requires R 4.6

1.0 In 3 of 49 releases 3.23

Description

This package provides an R wrapper for the popular Bowtie2 sequencing read aligner, optimized to run on NVIDIA graphics cards. It includes wrapper functions that enable both genome indexing and alignment to the generated indexes, ensuring high performance and ease of use within the R environment.

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Topics

Software › Technology › Sequencing
Software › WorkflowStep › Alignment
Software › WorkflowStep › Preprocessing
Software › BiologicalQuestion › Coverage

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