Skip to content

RadioGx

Bioc current

Analysis of Large-Scale Radio-Genomic Data

v2.16.0 · software · GPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

Computational tool box for radio-genomic analysis which integrates radio-response data, radio-biological modelling and comprehensive cell line annotations for hundreds of cancer cell lines. The 'RadioSet' class enables creation and manipulation of standardized datasets including information about cancer cells lines, radio-response assays and dose-response indicators. Included methods allow fitting and plotting dose-response data using established radio-biological models along with quality control to validate results. Additional functions related to fitting and plotting dose response curves, quantifying statistical correlation and calculating area under the curve (AUC) or survival fraction (SF) are included. For more details please see the included documentation, references, as well as: Manem, V. et al (2018) <doi:10.1101/449793>.

Code

Code metrics have not been computed for this package yet.

Topics

Software
Software › ResearchField › Pharmacogenetics
Software › WorkflowStep › QualityControl
Software › StatisticalMethod › Survival
Software › ResearchField › Pharmacogenomics
Software › StatisticalMethod › Classification

People