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PathNet

Bioc current

An R package for pathway analysis using topological information

v1.52.0 · software · GPL-3
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Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

PathNet uses topological information present in pathways and differential expression levels of genes (obtained from microarray experiment) to identify pathways that are 1) significantly enriched and 2) associated with each other in the context of differential expression. The algorithm is described in: PathNet: A tool for pathway analysis using topological information. Dutta B, Wallqvist A, and Reifman J. Source Code for Biology and Medicine 2012 Sep 24;7(1):10.

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Topics

Software › WorkflowStep › Pathways
Software › BiologicalQuestion › DifferentialExpression
Software › WorkflowStep › MultipleComparison
Software › WorkflowStep › Pathways › KEGG
Software › BiologicalQuestion › NetworkEnrichment
Software › WorkflowStep › Visualization › Network

People

Ludwig Geistlinger