OncoScore
Bioc currentA tool to identify potentially oncogenic genes
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
16 10 exported
Complexity
7.8 avg / 22 max
Call network
16 nodes / 12 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,875
Files
44
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
6
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
file LICENSE
License flags
SPDX valid, not OSI
History
Versions
21
First release
2016-09-28
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Luca De Sano maintainer author
- Carlo Gambacorti Passerini contributor
- Rocco Piazza contributor
- Daniele Ramazzotti author
- Roberta Spinelli contributor