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MatrixRider

Bioc current

Obtain total affinity and occupancies for binding site matrices on a given sequence

v1.44.0 · software · GPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.1 · Apr 17, 2015

Current · Requires R 4.6

1.0 In 23 of 49 releases 3.23

Description

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

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Topics

Software › BiologicalQuestion › GeneRegulation
Software › ResearchField › Genetics
Software › BiologicalQuestion › MotifAnnotation

People

Elena Grassi