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Bioc current

Heterogeneous error model for identification of differentially expressed genes under multiple conditions

v1.84.0 · software · GPL (>= 2)

Release Lineage

Entered 1.5 · Oct 25, 2004

Current · Requires R 4.6

1.0 In 44 of 49 releases 3.23

Description

This package fits heterogeneous error models for analysis of microarray data

Test coverage

Line coverage

Expression

Tests / Examples

Functions

57 27 exported

Complexity

7.4 avg / 43 max

Call network

57 nodes / 88 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

4,755

Files

49

Compiled share

38.4%

Has compiled src

Yes

Language breakdown

R 1,613 (33.9%)C/C++/src 1,828 (38.4%)Docs 787 (16.6%)Vignettes 527 (11.1%)

API

Exported functions

27

Internal functions

1

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.1.0

System requirements

C++ standard

License

GPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

44

First release

2004-11-03

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

3

LOC over versions

v1.5: 3,687 LOCv1.6: 3,687 LOCv1.7: 4,233 LOCv1.8: 4,233 LOCv1.9: 4,233 LOCv2.0: 4,233 LOCv2.1: 4,233 LOCv2.2: 4,233 LOCv2.3: 4,233 LOCv2.4: 4,233 LOCv2.5: 4,233 LOCv2.6: 4,233 LOCv2.7: 4,228 LOCv2.8: 4,228 LOCv2.9: 4,228 LOCv2.10: 4,228 LOCv2.11: 4,228 LOCv2.12: 4,228 LOCv2.13: 4,228 LOCv2.14: 4,755 LOCv3.0: 4,755 LOCv3.1: 4,755 LOCv3.2: 4,755 LOCv3.3: 4,755 LOCv3.4: 4,755 LOCv3.5: 4,755 LOCv3.6: 4,755 LOCv3.7: 4,755 LOCv3.8: 4,755 LOCv3.9: 4,755 LOCv3.10: 4,755 LOCv3.11: 4,755 LOCv3.12: 4,755 LOCv3.13: 4,755 LOCv3.14: 4,755 LOCv3.15: 4,755 LOCv3.16: 4,755 LOCv3.17: 4,755 LOCv3.18: 4,755 LOCv3.19: 4,755 LOCv3.20: 4,755 LOCv3.21: 4,755 LOCv3.22: 4,755 LOCv3.23: 4,755 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
93%
Return-value docs
11%
References docs
3%

Topics

People

HyungJun Cho

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