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FilterFFPE

Bioc current

FFPE Artificial Chimeric Read Filter for NGS data

v1.22.0 · software · LGPL-3
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

This package finds and filters artificial chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed paraffin-embedded (FFPE) tissues. These artificial chimeric reads can lead to a large number of false positive structural variation (SV) calls. The required input is an indexed BAM file of a FFPE sample.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › StructuralVariation
Software › Technology › Sequencing
Software › WorkflowStep › Alignment
Software › WorkflowStep › QualityControl
Software › WorkflowStep › Preprocessing

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