ypssc
Yeast-Proteome Secondary-Structure Calculator
v1.1.0
·
Nov 27, 2021
·
GPL (>= 3)
Description
An extension for 'NetSurfP-2.0' (Klausen et al. (2019) <doi:10.1002/prot.25674>) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.
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CRAN Check Status
9
NOTE
5
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | NOTE |
Check details (16 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-devel-linux-x86_64-debian-gcc
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-devel-linux-x86_64-fedora-clang
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Namespace in Imports field not imported from: ‘spelling’ All declared Imports should be used.
NOTE
r-devel-linux-x86_64-fedora-gcc
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Namespace in Imports field not imported from: ‘spelling’ All declared Imports should be used.
OK
r-devel-macos-arm64
*
NOTE
r-devel-windows-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable 'id' calculationBetaSheet: no visible binding for global variable 'id' calculationChain: no visible binding for global variable 'id' Undefined global functions or variables: id
OK
r-oldrel-macos-arm64
*
OK
r-oldrel-macos-x86_64
*
NOTE
r-oldrel-windows-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable 'id' calculationBetaSheet: no visible binding for global variable 'id' calculationChain: no visible binding for global variable 'id' Undefined global functions or variables: id
NOTE
r-patched-linux-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-release-linux-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
NOTE
r-release-windows-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable 'id' calculationBetaSheet: no visible binding for global variable 'id' calculationChain: no visible binding for global variable 'id' Undefined global functions or variables: id
Check History
NOTE 5 OK · 9 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-devel-linux-x86_64-debian-gcc
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Namespace in Imports field not imported from: ‘spelling’ All declared Imports should be used.
NOTE
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Namespace in Imports field not imported from: ‘spelling’ All declared Imports should be used.
NOTE
r-devel-windows-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable 'id' calculationBetaSheet: no visible binding for global variable 'id' calculationChain: no visible binding for global variable 'id' Undefined global functions or variables: id
NOTE
r-patched-linux-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-release-linux-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable ‘id’ calculationBetaSheet: no visible binding for global variable ‘id’ calculationChain: no visible binding for global variable ‘id’ Undefined global functions or variables: id
NOTE
r-release-windows-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable 'id' calculationBetaSheet: no visible binding for global variable 'id' calculationChain: no visible binding for global variable 'id' Undefined global functions or variables: id
NOTE
r-oldrel-windows-x86_64
R code for possible problems
calculationAlphaHelix: no visible binding for global variable 'id' calculationBetaSheet: no visible binding for global variable 'id' calculationChain: no visible binding for global variable 'id' Undefined global functions or variables: id
Dependency Network
Version History
new
1.1.0
Mar 10, 2026