txshift

Efficient Estimation of the Causal Effects of Stochastic Interventions

v0.3.8 · Feb 9, 2022 · MIT + file LICENSE

Description

Efficient estimation of the population-level causal effects of stochastic interventions on a continuous-valued exposure. Both one-step and targeted minimum loss estimators are implemented for the counterfactual mean value of an outcome of interest under an additive modified treatment policy, a stochastic intervention that may depend on the natural value of the exposure. To accommodate settings with outcome-dependent two-phase sampling, procedures incorporating inverse probability of censoring weighting are provided to facilitate the construction of inefficient and efficient one-step and targeted minimum loss estimators. The causal parameter and its estimation were first described by Díaz and van der Laan (2013) <doi:10.1111/j.1541-0420.2011.01685.x>, while the multiply robust estimation procedure and its application to data from two-phase sampling designs is detailed in NS Hejazi, MJ van der Laan, HE Janes, PB Gilbert, and DC Benkeser (2020) <doi:10.1111/biom.13375>. The software package implementation is described in NS Hejazi and DC Benkeser (2020) <doi:10.21105/joss.02447>. Estimation of nuisance parameters may be enhanced through the Super Learner ensemble model in 'sl3', available for download from GitHub using 'remotes::install_github("tlverse/sl3")'.

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	206.2s
r-devel-linux-x86_64-debian-gcc	NOTE	132.7s
r-devel-linux-x86_64-fedora-clang	NOTE	318.9s
r-devel-linux-x86_64-fedora-gcc	NOTE	326.2s
r-devel-macos-arm64	NOTE	55s
r-devel-windows-x86_64	NOTE	196s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	124s
r-oldrel-windows-x86_64	NOTE	266s
r-patched-linux-x86_64	NOTE	198.8s
r-release-linux-x86_64	NOTE	194.4s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	173s
r-release-windows-x86_64	NOTE	198s

Check details (17 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-devel-linux-x86_64-debian-gcc

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-devel-linux-x86_64-fedora-clang

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-devel-macos-arm64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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NOTE r-devel-windows-x86_64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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NOTE r-oldrel-macos-arm64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-oldrel-macos-arm64

package dependencies

Package which this enhances but not available for checking: ‘sl3’

NOTE r-oldrel-macos-x86_64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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NOTE r-oldrel-macos-x86_64

package dependencies

Package which this enhances but not available for checking: ‘sl3’

NOTE r-oldrel-windows-x86_64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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NOTE r-oldrel-windows-x86_64

package dependencies

Package which this enhances but not available for checking: 'sl3'

NOTE r-patched-linux-x86_64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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NOTE r-release-linux-x86_64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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NOTE r-release-macos-arm64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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NOTE r-release-macos-x86_64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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NOTE r-release-windows-x86_64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-devel-linux-x86_64-fedora-clang

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-devel-linux-x86_64-fedora-gcc

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-release-linux-x86_64

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checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-release-macos-arm64

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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-release-windows-x86_64

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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
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    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^

NOTE r-oldrel-macos-arm64

package dependencies

Package which this enhances but not available for checking: ‘sl3’

NOTE r-oldrel-macos-x86_64

package dependencies

Package which this enhances but not available for checking: ‘sl3’

NOTE r-oldrel-windows-x86_64

package dependencies

Package which this enhances but not available for checking: 'sl3'

Dependency Network

Version History

new 0.3.8 Mar 9, 2026