symphony
Efficient and Precise Single-Cell Reference Atlas Mapping
v0.1.3
·
May 25, 2026
·
GPL (>= 3)
Description
Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 31, 2026
ERROR 10 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Apr 26, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
dependencies in R code
Missing or unexported objects: ‘harmony::HarmonyMatrix’ ‘harmony::moe_ridge_get_betas’
ERROR
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Missing or unexported objects: ‘harmony::HarmonyMatrix’ ‘harmony::moe_ridge_get_betas’
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR
r-devel-windows-x86_64
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/symphony.Rcheck/00install.out' for details.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Packages required but not available: 'harmony', 'uwot' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.