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statgenIBD

Calculation of IBD Probabilities

v1.0.10 · Mar 2, 2026 · GPL

Description

For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

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CRAN Check Status

4 NOTE
10 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: ‘statgenGWAS’
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: ‘statgenGWAS’
  All declared Imports should be used.
OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    extdata   2.4Mb
    libs      4.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    extdata   2.4Mb
    libs      4.2Mb
OK r-oldrel-windows-x86_64

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OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: ‘statgenGWAS’
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: ‘statgenGWAS’
  All declared Imports should be used.
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    extdata   2.4Mb
    libs      4.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    extdata   2.4Mb
    libs      4.2Mb

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies data.table ggplot2 Matrix R.utils rlang Rcpp statgenGWAS stringi statgenMPP statgenIBD

Version History

new 1.0.10 Mar 9, 2026