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statgenGWAS

Genome Wide Association Studies

v1.0.13 · Feb 19, 2026 · GPL-3

Description

Fast single trait Genome Wide Association Studies (GWAS) following the method described in Kang et al. (2010), <doi:10.1038/ng.548>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

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CRAN Check Status

3 NOTE
11 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (16 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

Rd cross-references

Package unavailable to check Rd xrefs: ‘snpStats’
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   5.0Mb
NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘snpStats’
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  9.8Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    libs   5.2Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   1.3Mb
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘snpStats’
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  9.8Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    libs   5.2Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   1.3Mb

Reverse Dependencies (3)

depends

Dependency Network

Dependencies Reverse dependencies data.table ggplot2 LMMsolver rlang Rcpp sommer statgenMPP statgenIBD statgenQTLxT statgenGWAS

Version History

new 1.0.13 Mar 9, 2026