spOccupancy

Description

Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2022) <doi:10.18637/jss.v103.i05>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.

Downloads

CRAN Check Status

  installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R      2.0Mb
    libs   3.2Mb

  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    R      2.0Mb
    libs   3.8Mb

Check History

  installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R      2.0Mb
    libs   3.2Mb

  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    R      2.0Mb
    libs   3.8Mb

Dependency Network

Version History