smfishHmrf

Hidden Markov Random Field for Spatial Transcriptomic Data

v0.1 · Nov 3, 2020 · GPL

Description

Discovery of spatial patterns with Hidden Markov Random Field. This package is designed for spatial transcriptomic data and single molecule fluorescent in situ hybridization (FISH) data such as sequential fluorescence in situ hybridization (seqFISH) and multiplexed error-robust fluorescence in situ hybridization (MERFISH). The methods implemented in this package are described in Zhu et al. (2018) <doi:10.1038/nbt.4260>.

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CRAN Check Status

2 NOTE

12 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	39.5s
r-devel-linux-x86_64-debian-gcc	NOTE	31.8s
r-devel-linux-x86_64-fedora-clang	OK	60.9s
r-devel-linux-x86_64-fedora-gcc	OK	60.7s
r-devel-macos-arm64	OK	16s
r-devel-windows-x86_64	OK	75s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	36s
r-oldrel-windows-x86_64	OK	82s
r-patched-linux-x86_64	OK	38.6s
r-release-linux-x86_64	OK	36.8s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	47s
r-release-windows-x86_64	OK	71s

Check details (2 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Qian Zhu <zqian@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qian",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "zqian@jimmy.harvard.edu"),
               person(given = "Guo-Cheng",
                      family = "Yuan",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Qian Zhu <zqian@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qian",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "zqian@jimmy.harvard.edu"),
               person(given = "Guo-Cheng",
                      family = "Yuan",
                      role = "aut"))
as necessary.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Qian Zhu <zqian@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qian",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "zqian@jimmy.harvard.edu"),
               person(given = "Guo-Cheng",
                      family = "Yuan",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Qian Zhu <zqian@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qian",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "zqian@jimmy.harvard.edu"),
               person(given = "Guo-Cheng",
                      family = "Yuan",
                      role = "aut"))
as necessary.

Dependency Network

Version History

new 0.1 Mar 10, 2026