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serosv

Model Infectious Disease Parameters from Serosurveys

v1.1.0 · Apr 8, 2025 · MIT + file LICENSE

Description

An easy-to-use and efficient tool to estimate infectious diseases parameters using serological data. Implemented models include SIR models (basic_sir_model(), static_sir_model(), mseir_model(), sir_subpops_model()), parametric models (polynomial_model(), fp_model()), nonparametric models (lp_model()), semiparametric models (penalized_splines_model()), hierarchical models (hierarchical_bayesian_model()). The package is based on the book "Modeling Infectious Disease Parameters Based on Serological and Social Contact Data: A Modern Statistical Perspective" (Hens, Niel & Shkedy, Ziv & Aerts, Marc & Faes, Christel & Damme, Pierre & Beutels, Philippe., 2013) <doi:10.1007/978-1-4614-4072-7>.

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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (17 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 65.1Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    help   1.4Mb
    libs  61.9Mb
NOTE r-oldrel-macos-x86_64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 66.1Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    help   1.4Mb
    libs  62.9Mb
NOTE r-oldrel-windows-x86_64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    help   1.3Mb
    libs   3.7Mb
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 65.1Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    help   1.4Mb
    libs  61.9Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 66.1Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    help   1.4Mb
    libs  62.9Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    help   1.3Mb
    libs   3.7Mb

Dependency Network

Dependencies Reverse dependencies deSolve dplyr ggplot2 locfit purrr stringr magrittr mgcv mixdist patchwork assertthat Rcpp (>= 0.12.0) RcppParallel rstan rstantools +2 more dependencies serosv

Version History

new 1.1.0 Mar 9, 2026