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serofoi

Bayesian Estimation of the Force of Infection from Serological Data

v1.0.3 · Mar 31, 2025 · MIT + file LICENSE

Description

Estimating the force of infection from time varying, age varying, or constant serocatalytic models from population based seroprevalence studies using a Bayesian framework, including data simulation functions enabling the generation of serological surveys based on this models. This tool also provides a flexible prior specification syntax for the force of infection and the seroreversion rate, as well as methods to assess model convergence and comparison criteria along with useful visualisation functions.

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r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
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r-release-macos-arm64 OK
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r-release-windows-x86_64 OK
Check details (17 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 107.7Mb
  sub-directories of 1Mb or more:
    libs  106.4Mb
NOTE r-oldrel-macos-x86_64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 109.8Mb
  sub-directories of 1Mb or more:
    libs  108.5Mb
NOTE r-oldrel-windows-x86_64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    libs   6.2Mb
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 107.7Mb
  sub-directories of 1Mb or more:
    libs  106.4Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 109.8Mb
  sub-directories of 1Mb or more:
    libs  108.5Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    libs   6.2Mb

Dependency Network

Dependencies Reverse dependencies bayesplot checkmate config cowplot dplyr ggplot2 glue loo expm purrr Rcpp rstan rstantools tibble tidyr serofoi

Version History

new 1.0.3 Mar 9, 2026