scistreer
Maximum-Likelihood Perfect Phylogeny Inference at Scale
Description
Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).
Downloads
390
Last 30 days
9061st
1.2K
Last 90 days
4.9K
Last year
Trend: -1.8% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
Check History
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
ERROR 10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
package dependencies
Package required but not available: ‘ggtree’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
ERROR 8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/scistreer.Rcheck/00install.out' for details.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
for GNU extensions in Makefiles
GNU make is a SystemRequirements.