scistreer
Maximum-Likelihood Perfect Phylogeny Inference at Scale
v1.2.1
·
Feb 4, 2026
·
GPL-3
Description
Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
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r-devel-linux-x86_64-debian-clang
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r-devel-linux-x86_64-debian-gcc
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NOTE
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
NOTE
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
NOTE
r-oldrel-macos-arm64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
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for GNU extensions in Makefiles
GNU make is a SystemRequirements.
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r-oldrel-windows-x86_64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
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r-patched-linux-x86_64
*
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r-release-linux-x86_64
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r-release-macos-arm64
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Check History
NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
NOTE
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Namespace in Imports field not imported from: ‘Rcpp’ All declared Imports should be used.
NOTE
r-oldrel-macos-arm64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
NOTE
r-oldrel-macos-x86_64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
NOTE
r-oldrel-windows-x86_64
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
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Version History
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1.2.1
Mar 9, 2026