saasCNV

Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data

v0.3.4 · May 18, 2016 · GPL (>= 2)

Description

Perform joint segmentation on two signal dimensions derived from total read depth (intensity) and allele specific read depth (intensity) for whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.

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CRAN Check Status

2 NOTE

12 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	44.8s
r-devel-linux-x86_64-debian-gcc	NOTE	32.2s
r-devel-linux-x86_64-fedora-clang	OK	66.1s
r-devel-linux-x86_64-fedora-gcc	OK	68.7s
r-devel-macos-arm64	OK	15s
r-devel-windows-x86_64	OK	70s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	44s
r-oldrel-windows-x86_64	OK	78s
r-patched-linux-x86_64	OK	41.1s
r-release-linux-x86_64	OK	40.3s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	45s
r-release-windows-x86_64	OK	71s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Zhongyang Zhang <zhongyang.zhang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhongyang.zhang@mssm.edu"),
               person(given = "Ke",
                      family = "Hao",
                      role = "aut"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "ctb"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Zhongyang Zhang <zhongyang.zhang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhongyang.zhang@mssm.edu"),
               person(given = "Ke",
                      family = "Hao",
                      role = "aut"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "ctb"))
as necessary.

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

OK r-oldrel-macos-arm64

OK r-oldrel-macos-x86_64

OK r-oldrel-windows-x86_64

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Zhongyang Zhang <zhongyang.zhang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhongyang.zhang@mssm.edu"),
               person(given = "Ke",
                      family = "Hao",
                      role = "aut"),
               person(given = c("Nancy", "R."),
                      family = "Zh

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Zhongyang Zhang <zhongyang.zhang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhongyang.zhang@mssm.edu"),
               person(given = "Ke",
                      family = "Hao",
                      role = "aut"),
               person(given = c("Nancy", "R."),
                      family = "Zh

Dependency Network

Version History

new 0.3.4 Mar 9, 2026