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R We There Yet? Visualizing MCMC Convergence in Phylogenetics

v1.0.3 · Mar 27, 2025 · GPL-2

Description

Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment, as well as a host of other functions. Warren, Geneva, and Lanfear (2017), <doi:10.1093/molbev/msw279>.

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OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

Dependency Network

Dependencies Reverse dependencies ape ggplot2 reshape2 phangorn coda viridis plyr ggdendro GGally TreeDist rwty

Version History

new 1.0.3 Mar 9, 2026