rvHPDT

Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees

v4.0 · May 12, 2022 · GPL (>= 2)

Description

To detecting rare variants for binary traits using general pedigrees, the pedigree disequilibrium tests are proposed by collapsing rare haplotypes/variants with/without weights. To run the test, MERLIN is needed in Linux for haplotyping.

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CRAN Check Status

2 NOTE

12 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	28.1s
r-devel-linux-x86_64-debian-gcc	NOTE	20.8s
r-devel-linux-x86_64-fedora-clang	OK	42.5s
r-devel-linux-x86_64-fedora-gcc	OK	42.3s
r-devel-macos-arm64	OK	11s
r-devel-windows-x86_64	OK	49s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	24s
r-oldrel-windows-x86_64	OK	54s
r-patched-linux-x86_64	OK	25.4s
r-release-linux-x86_64	OK	25.1s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	27s
r-release-windows-x86_64	OK	51s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "wei.guo3@nih.gov")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "wei.guo3@nih.gov")
as necessary.

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

OK r-oldrel-macos-arm64

OK r-oldrel-macos-x86_64

OK r-oldrel-windows-x86_64

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "wei.guo3@nih.gov")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "wei.guo3@nih.gov")
as necessary.

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Version History

new 4.0 Mar 9, 2026