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revert

Reversion Mutation Detector for DNA Sequencing Data

v1.0.0 · Dec 17, 2025 · GPL-2

Description

Reversion mutations are secondary mutations that reverse the deleterious effects of an original pathogenic mutation, partially or fully restoring the gene's function. The revert package detects reversion mutations for a specific pathogenic mutation from DNA-seq bam files.

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CRAN Check Status

3 ERROR
1 NOTE
10 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 ERROR
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 ERROR
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available:
  'BSgenome', 'Biostrings', 'Rsamtools', 'ensembldb', 'pwalign'

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75',
  'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK r-devel-linux-x86_64-debian-gcc

*


            
OK r-devel-linux-x86_64-fedora-clang

*


            
OK r-devel-linux-x86_64-fedora-gcc

*


            
OK r-devel-macos-arm64

*


            
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/revert.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75',
  'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86'
ERROR r-oldrel-macos-x86_64

package dependencies

Package required but not available: ‘pwalign’

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75',
  'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK r-oldrel-windows-x86_64

*


            
OK r-patched-linux-x86_64

*


            
OK r-release-linux-x86_64

*


            
OK r-release-macos-arm64

*


            
OK r-release-macos-x86_64

*


            
OK r-release-windows-x86_64

*


            

Check History

ERROR 10 OK · 1 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 9, 2026
ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available:
  'BSgenome', 'Biostrings', 'Rsamtools', 'ensembldb', 'pwalign'

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75',
  'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/revert.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75',
  'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86'
ERROR r-oldrel-macos-x86_64

package dependencies

Package required but not available: ‘pwalign’

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75',
  'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

Dependency Network

Dependencies Reverse dependencies BSgenome BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ensembldb pwalign revert

Version History

new 1.0.0 Mar 10, 2026