prevtoinc
Prevalence to Incidence Calculations for Point-Prevalence Studies in a Nosocomial Setting
v0.12.0
·
Jun 18, 2019
·
MIT + file LICENSE
Description
Functions to simulate point prevalence studies (PPSs) of healthcare-associated infections (HAIs) and to convert prevalence to incidence in steady state setups. Companion package to the preprint Willrich et al., From prevalence to incidence - a new approach in the hospital setting; <doi:10.1101/554725> , where methods are explained in detail.
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CRAN Check Status
14
NOTE
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (17 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-oldrel-macos-arm64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-oldrel-macos-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-oldrel-windows-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_I_mixed.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_mixed.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc
...[truncated]...
y
checkRd: (-1) calculate_I_smooth.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calculate_I_smooth.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simulate_incidence_stats.Rd:20: Lost braces; missing escapes or markup?
20 | \item{x.los - average length of stay x_{los}}
| ^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) calculate_CI_I_pp.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculate_CI_I_pp.Rd:15: Lost braces in \itemize; meant \describe ?
chec
...[truncated]...
^
checkRd: (-1) simulate_incidence_stats.Rd:21: Lost braces; missing escapes or markup?
21 | \item{x.loi - average length of infection x_{loi}}
| ^