preregr

Specify (Pre)Registrations and Export Them Human- And Machine-Readably

v0.2.9 · May 5, 2023 · GPL (>= 3)

Description

Preregistrations, or more generally, registrations, enable explicit timestamped and (often but not necessarily publicly) frozen documentation of plans and expectations as well as decisions and justifications. In research, preregistrations are commonly used to clearly document plans and facilitate justifications of deviations from those plans, as well as decreasing the effects of publication bias by enabling identification of research that was conducted but not published. Like reporting guidelines, (pre)registration forms often have specific structures that facilitate systematic reporting of important items. The 'preregr' package facilitates specifying (pre)registrations in R and exporting them to a human-readable format (using R Markdown partials or exporting to an 'HTML' file) as well as human-readable embedded data (using 'JSON'), as well as importing such exported (pre)registration specifications from such embedded 'JSON'.

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CRAN Check Status

3 ERROR

11 NOTE

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	96.2s
r-devel-linux-x86_64-debian-gcc	NOTE	72.2s
r-devel-linux-x86_64-fedora-clang	NOTE	152.6s
r-devel-linux-x86_64-fedora-gcc	NOTE	163.7s
r-devel-macos-arm64	NOTE	59s
r-devel-windows-x86_64	ERROR	132s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	118s
r-oldrel-windows-x86_64	ERROR	153s
r-patched-linux-x86_64	NOTE	92.2s
r-release-linux-x86_64	NOTE	91.7s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	143s
r-release-windows-x86_64	ERROR	129s

Check details (17 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

ERROR r-devel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'creating_form_from_spreadsheet.Rmd' using rmarkdown
--- finished re-building 'creating_form_from_spreadsheet.Rmd'

--- re-building 'creating_prereg_form.Rmd' using rmarkdown
--- finished re-building 'creating_prereg_form.Rmd'

--- re-building 'form_OSFprereg_v1.Rmd' using rmarkdown
--- finished re-building 'form_OSFprereg_v1.Rmd'

--- re-building 'form_OSFqual1_v1.Rmd' using rmarkdown
--- finished re-building 'form_OSFqual1_v1.Rmd'

--- re-building 'form_genSysRev_v1.Rmd' using rmarkdown
--- finished re-building 'form_genSysRev_v1.Rmd'

--- re-building 'form_generalPurpose_v1.Rmd' using rmarkdown
--- finished re-building 'form_generalPurpose_v1.Rmd'

--- re-building 'form_generalPurpose_v1_1.Rmd' using rmarkdown
--- finished re-building 'form_generalPurpose_v1_1.Rmd'

--- re-building 'form_inclDivAddon_v0_1.Rmd' using rmarkdown
--- finished re-building 'form_inclDivAddon_v0_1.Rmd'

--- re-building 'form_inclSysRev_v0_92.Rmd' using rmarkdown
--- finished re-building 'form_inclSysRev_v0_92.Rmd'

--- re-building 'form_prereg2D_v1.Rmd' using rmarkdown
--- finished re-building 'form_prereg2D_v1.Rmd'

--- re-building 'form_preregQE_v0_93.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_93.Rmd'

--- re-building 'form_preregQE_v0_94.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_94.Rmd'

--- re-building 'form_preregQE_v0_95.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_95.Rmd'

--- re-building 'form_prpQuant_v1.Rmd' using rmarkdown
--- finished re-building 'form_prpQuant_v1.Rmd'

--- re-building 'importing_form_from_url.Rmd' using rmarkdown

Quitting from importing_form_from_url.Rmd:19-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. └─preregr::import_from_html("https://preregr.opens.science/articles/creating_prereg_form.html")
  2.   ├─rvest::read_html(x = x)
  3.   └─xml2:::read_html.default(x = x)
  4.     ├─base::suppressWarnings(...)
  5.     │ └─base::withCallingHandlers(...)
  6.     ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
  7.     └─xml2:::read_xml.character(...)
  8.       └─xml2:::read_xml.connection(...)
  9.         ├─base::open(x, "rb")
 10.         └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'importing_form_from_url.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'importing_form_from_url.Rmd'

--- re-building 'importing_pregistration_from_url.Rmd' using rmarkdown

Quitting from importing_pregistration_from_url.Rmd:21-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. └─preregr::import_from_html("https://preregr.opens.science/articles/specifying_prereg_content.html")
  2.   ├─rvest::read_html(x = x)
  3.   └─xml2:::read_html.default(x = x)
  4.     ├─base::suppressWarnings(...)
  5.     │ └─base::withCallingHandlers(...)
  6.     ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
  7.     └─xml2:::read_xml.character(...)
  8.       └─xml2:::read_xml.connection(...)
  9.         ├─base::open(x, "rb")
 10.         └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'importing_pregistration_from_url.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'importing_pregistration_from_url.Rmd'

--- re-building 'preregr.Rmd' using rmarkdown
--- finished re-building 'preregr.Rmd'

--- re-building 'rmd_template_from_form.Rmd' using rmarkdown
--- finished re-building 'rmd_template_from_form.Rmd'

--- re-building 'specifying_prereg_content.Rmd' using rmarkdown
--- finished re-building 'specifying_prereg_content.Rmd'

SUMMARY: processing the following files failed:
  'importing_form_from_url.Rmd' 'importing_pregistration_from_url.Rmd'

Error: Vignette re-building failed.
Execution halted

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'creating_form_from_spreadsheet.Rmd' using rmarkdown
--- finished re-building 'creating_form_from_spreadsheet.Rmd'

--- re-building 'creating_prereg_form.Rmd' using rmarkdown
--- finished re-building 'creating_prereg_form.Rmd'

--- re-building 'form_OSFprereg_v1.Rmd' using rmarkdown
--- finished re-building 'form_OSFprereg_v1.Rmd'

--- re-building 'form_OSFqual1_v1.Rmd' using rmarkdown
--- finished re-building 'form_OSFqual1_v1.Rmd'

--- re-building 'form_genSysRev_v1.Rmd' using rmarkdown
--- finished re-building 'form_genSysRev_v1.Rmd'

--- re-building 'form_generalPurpose_v1.Rmd' using rmarkdown
--- finished re-building 'form_generalPurpose_v1.Rmd'

--- re-building 'form_generalPurpose_v1_1.Rmd' using rmarkdown
--- finished re-building 'form_generalPurpose_v1_1.Rmd'

--- re-building 'form_inclDivAddon_v0_1.Rmd' using rmarkdown
--- finished re-building 'form_inclDivAddon_v0_1.Rmd'

--- re-building 'form_inclSysRev_v0_92.Rmd' using rmarkdown
--- finished re-building 'form_inclSysRev_v0_92.Rmd'

--- re-building 'form_prereg2D_v1.Rmd' using rmarkdown
--- finished re-building 'form_prereg2D_v1.Rmd'

--- re-building 'form_preregQE_v0_93.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_93.Rmd'

--- re-building 'form_preregQE_v0_94.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_94.Rmd'

--- re-building 'form_preregQE_v0_95.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_95.Rmd'

--- re-building 'form_prpQuant_v1.Rmd' using rmarkdown
--- finished re-building 'form_prpQuant_v1.Rmd'

--- re-building 'importing_form_from_url.Rmd' using rmarkdown

Quitting from importing_form_from_url.Rmd:19-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. └─preregr::import_from_html("https://preregr.opens.science/articles/creating_prereg_form.html")
  2.   ├─rvest::read_html(x = x)
  3.   └─xml2:::read_html.default(x = x)
  4.     ├─base::suppressWarnings(...)
  5.     │ └─base::withCallingHandlers(...)
  6.     ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
  7.     └─xml2:::read_xml.character(...)
  8.       └─xml2:::read_xml.connection(...)
  9.         ├─base::open(x, "rb")
 10.         └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'importing_form_from_url.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'importing_form_from_url.Rmd'

--- re-building 'importing_pregistration_from_url.Rmd' using rmarkdown

Quitting from importing_pregistration_from_url.Rmd:21-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. └─preregr::import_from_html("https://preregr.opens.science/articles/specifying_prereg_content.html")
  2.   ├─rvest::read_html(x = x)
  3.   └─xml2:::read_html.default(x = x)
  4.     ├─base::suppressWarnings(...)
  5.     │ └─base::withCallingHandlers(...)
  6.     ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
  7.     └─xml2:::read_xml.character(...)
  8.       └─xml2:::read_xml.connection(...)
  9.         ├─base::open(x, "rb")
 10.         └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'importing_pregistration_from_url.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'importing_pregistration_from_url.Rmd'

--- re-building 'preregr.Rmd' using rmarkdown
--- finished re-building 'preregr.Rmd'

--- re-building 'rmd_template_from_form.Rmd' using rmarkdown
--- finished re-building 'rmd_template_from_form.Rmd'

--- re-building 'specifying_prereg_content.Rmd' using rmarkdown
--- finished re-building 'specifying_prereg_content.Rmd'

SUMMARY: processing the following files failed:
  'importing_form_from_url.Rmd' 'importing_pregistration_from_url.Rmd'

Error: Vignette re-building failed.
Execution halted

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^

ERROR r-release-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'creating_form_from_spreadsheet.Rmd' using rmarkdown
--- finished re-building 'creating_form_from_spreadsheet.Rmd'

--- re-building 'creating_prereg_form.Rmd' using rmarkdown
--- finished re-building 'creating_prereg_form.Rmd'

--- re-building 'form_OSFprereg_v1.Rmd' using rmarkdown
--- finished re-building 'form_OSFprereg_v1.Rmd'

--- re-building 'form_OSFqual1_v1.Rmd' using rmarkdown
--- finished re-building 'form_OSFqual1_v1.Rmd'

--- re-building 'form_genSysRev_v1.Rmd' using rmarkdown
--- finished re-building 'form_genSysRev_v1.Rmd'

--- re-building 'form_generalPurpose_v1.Rmd' using rmarkdown
--- finished re-building 'form_generalPurpose_v1.Rmd'

--- re-building 'form_generalPurpose_v1_1.Rmd' using rmarkdown
--- finished re-building 'form_generalPurpose_v1_1.Rmd'

--- re-building 'form_inclDivAddon_v0_1.Rmd' using rmarkdown
--- finished re-building 'form_inclDivAddon_v0_1.Rmd'

--- re-building 'form_inclSysRev_v0_92.Rmd' using rmarkdown
--- finished re-building 'form_inclSysRev_v0_92.Rmd'

--- re-building 'form_prereg2D_v1.Rmd' using rmarkdown
--- finished re-building 'form_prereg2D_v1.Rmd'

--- re-building 'form_preregQE_v0_93.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_93.Rmd'

--- re-building 'form_preregQE_v0_94.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_94.Rmd'

--- re-building 'form_preregQE_v0_95.Rmd' using rmarkdown
--- finished re-building 'form_preregQE_v0_95.Rmd'

--- re-building 'form_prpQuant_v1.Rmd' using rmarkdown
--- finished re-building 'form_prpQuant_v1.Rmd'

--- re-building 'importing_form_from_url.Rmd' using rmarkdown

Quitting from importing_form_from_url.Rmd:19-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. └─preregr::import_from_html("https://preregr.opens.science/articles/creating_prereg_form.html")
  2.   ├─rvest::read_html(x = x)
  3.   └─xml2:::read_html.default(x = x)
  4.     ├─base::suppressWarnings(...)
  5.     │ └─base::withCallingHandlers(...)
  6.     ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
  7.     └─xml2:::read_xml.character(...)
  8.       └─xml2:::read_xml.connection(...)
  9.         ├─base::open(x, "rb")
 10.         └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'importing_form_from_url.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'importing_form_from_url.Rmd'

--- re-building 'importing_pregistration_from_url.Rmd' using rmarkdown

Quitting from importing_pregistration_from_url.Rmd:21-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. └─preregr::import_from_html("https://preregr.opens.science/articles/specifying_prereg_content.html")
  2.   ├─rvest::read_html(x = x)
  3.   └─xml2:::read_html.default(x = x)
  4.     ├─base::suppressWarnings(...)
  5.     │ └─base::withCallingHandlers(...)
  6.     ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
  7.     └─xml2:::read_xml.character(...)
  8.       └─xml2:::read_xml.connection(...)
  9.         ├─base::open(x, "rb")
 10.         └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'importing_pregistration_from_url.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'importing_pregistration_from_url.Rmd'

--- re-building 'preregr.Rmd' using rmarkdown
--- finished re-building 'preregr.Rmd'

--- re-building 'rmd_template_from_form.Rmd' using rmarkdown
--- finished re-building 'rmd_template_from_form.Rmd'

--- re-building 'specifying_prereg_content.Rmd' using rmarkdown
--- finished re-building 'specifying_prereg_content.Rmd'

SUMMARY: processing the following files failed:
  'importing_form_from_url.Rmd' 'importing_pregistration_from_url.Rmd'

Error: Vignette re-building failed.
Execution halted

Check History

ERROR 0 OK · 11 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

ERROR r-devel-windows-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

ERROR r-release-windows-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

ERROR r-oldrel-windows-x86_64

Rd files

checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or ma

preregr

Description

Downloads

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Check History

Reverse Dependencies (1)

suggests

Dependency Network

Version History