popkin
Estimate Kinship and FST under Arbitrary Population Structure
v1.3.23
·
Jan 6, 2023
·
GPL-3
Description
Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
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r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
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NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead.
Reverse Dependencies (4)
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1.3.23
Mar 10, 2026