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phylin

Spatial Interpolation of Genetic Data

v2.0.2 · Dec 12, 2019 · GPL (>= 2)

Description

The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.

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CRAN Check Status

2 NOTE
12 OK
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pedro",
                      family = "Tarroso",
                      role = c("aut", "cre"),
                      email = "ptarroso@cibio.up.pt"),
               person(given = "Guillermo",
                      family = "Velo-Anton",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Carvalho",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pedro",
                      family = "Tarroso",
                      role = c("aut", "cre"),
                      email = "ptarroso@cibio.up.pt"),
               person(given = "Guillermo",
                      family = "Velo-Anton",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Carvalho",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

*


            
OK r-devel-windows-x86_64

*


            
OK r-oldrel-macos-arm64

*


            
OK r-oldrel-macos-x86_64

*


            
OK r-oldrel-windows-x86_64

*


            
OK r-patched-linux-x86_64

*


            
OK r-release-linux-x86_64

*


            
OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pedro",
                      family = "Tarroso",
                      role = c("aut", "cre"),
                      email = "ptarroso@cibio.up.pt"),
               person(given = "Guillermo",
                      family = "Velo-Anton",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Carvalho
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pedro",
                      family = "Tarroso",
                      role = c("aut", "cre"),
                      email = "ptarroso@cibio.up.pt"),
               person(given = "Guillermo",
                      family = "Velo-Anton",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Carvalho

Version History

new 2.0.2 Mar 9, 2026