phyclust
Phylogenetic Clustering (Phyloclustering)
v0.1-34
·
Sep 5, 2023
·
GPL (>= 2)
Description
Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach to identify population structure from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient implementation of phyloclustering for DNA and SNP data, capable of clustering individuals into subpopulations and identifying molecular sequences representative of those subpopulations. It is designed in C for performance, interfaced with R for visualization, and incorporates other popular open source programs including ms (Hudson 2002) <doi:10.1093/bioinformatics/18.2.337>, seq-gen (Rambaut and Grassly 1997) <doi:10.1093/bioinformatics/13.3.235>, Hap-Clustering (Tzeng 2005) <doi:10.1002/gepi.20063> and PAML baseml (Yang 1997, 2007) <doi:10.1093/bioinformatics/13.5.555>, <doi:10.1093/molbev/msm088>, for simulating data, additional analyses, and searching the best tree. See the phyclust website for more information, documentations and examples.
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CRAN Check Status
14
NOTE
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (16 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’
Found the following (possibly) invalid file URIs:
URI: phyclust/doc/Documents/tzeng-Readme.txt
From: inst/doc/phyclust-guide.pdf
URI: phyclust/inst/doc/Documents/tzeng-Readme.txt
From: inst/doc/phyclust-guide.pdf
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’
Found the following (possibly) invalid file URIs:
URI: phyclust/doc/Documents/tzeng-Readme.txt
From: inst/doc/phyclust-guide.pdf
URI: phyclust/inst/doc/Documents/tzeng-Readme.txt
From: inst/doc/phyclust-guide.pdf
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’
Found the following (possibly) invalid file URIs:
URI: phyclust/doc/Documents/tzeng-Readme.txt
From: inst/doc/phyclust-guide.pdf
URI: phyclust/inst/doc/Documents/tzeng-Readme.txt
From: inst/doc/phyclust-guide.pdf
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’
Found the following (possibly) invalid file URIs:
URI: phyclust/doc/Documents/tzeng-Readme.txt
From: inst/doc/phyclust-guide.pdf
URI: phyclust/inst/doc/Documents/tzeng-Readme.txt
From: inst/doc/phyclust-guide.pdf
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
Reverse Dependencies (4)
imports
suggests
Dependency Network
Version History
new
0.1-34
Mar 10, 2026