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pez

Phylogenetics for the Environmental Sciences

v1.2-5 · Aug 28, 2025 · GPL-3

Description

Eco-phylogenetic and community phylogenetic analyses. Keeps community ecological and phylogenetic data matched up and comparable using 'comparative.comm' objects. Wrappers for common community phylogenetic indices ('pez.shape', 'pez.evenness', 'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation of Cavender-Bares (2004) correlation of phylogenetic and ecological matrices ('fingerprint.regression'). Phylogenetic Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives & Helmus (2011) and Rafferty & Ives (2013). Simulation of null assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').

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r-oldrel-macos-arm64 OK
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r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
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r-release-windows-x86_64 OK
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Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

Reverse Dependencies (1)

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Dependency Network

Dependencies Reverse dependencies ape caper picante quantreg mvtnorm vegan ade4 FD (>= 1.0-12) Matrix animation (>= 2.4-0) phytools phyr pez

Version History

new 1.2-5 Mar 9, 2026