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pcadapt

Fast Principal Component Analysis for Outlier Detection

v4.4.1 · Jul 25, 2025 · GPL (>= 2)

Description

Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020) <DOI:10.1093/molbev/msaa053>.

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r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is  6.4Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      2.8Mb
OK r-oldrel-windows-x86_64

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OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  6.4Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    extdata   2.7Mb
    libs      2.8Mb

Reverse Dependencies (1)

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Dependency Network

Dependencies Reverse dependencies bigutilsr data.table ggplot2 magrittr mmapcharr Rcpp RSpectra bigsnpr pcadapt

Version History

new 4.4.1 Mar 9, 2026