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outbreaker2

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

v1.1.4 · Dec 16, 2025 · MIT + file LICENSE

Description

Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.

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OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

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Dependency Network

Dependencies Reverse dependencies Rcpp ape ggplot2 magrittr visNetwork o2geosocial o2ools outbreaker2

Version History

new 1.1.4 Mar 10, 2026