otuSummary

Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres

v0.1.2 · Sep 5, 2023 · GPL (>= 3)

Description

Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) <doi:10.1038/nrmicro3400>).

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2 NOTE

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	59.2s
r-devel-linux-x86_64-debian-gcc	NOTE	39s
r-devel-linux-x86_64-fedora-clang	OK	95.8s
r-devel-linux-x86_64-fedora-gcc	OK	88.3s
r-devel-macos-arm64	OK	16s
r-devel-windows-x86_64	OK	78s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	42s
r-oldrel-windows-x86_64	OK	95s
r-patched-linux-x86_64	OK	53.5s
r-release-linux-x86_64	OK	53.7s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	54s
r-release-windows-x86_64	OK	79s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Sizhong Yang <yanglzu@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sizhong",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yanglzu@163.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Sizhong Yang <yanglzu@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sizhong",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yanglzu@163.com")
as necessary.

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

OK r-oldrel-macos-arm64

OK r-oldrel-macos-x86_64

OK r-oldrel-windows-x86_64

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Sizhong Yang <yanglzu@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sizhong",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yanglzu@163.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Sizhong Yang <yanglzu@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sizhong",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yanglzu@163.com")
as necessary.

otuSummary

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