nebula
Negative Binomial Mixed Models Using Large-Sample Approximation for Differential Expression Analysis of ScRNA-Seq Data
v1.5.6
·
Dec 6, 2025
·
GPL-3
Description
A fast negative binomial mixed model for conducting association analysis of multi-subject single-cell data. It can be used for identifying marker genes, differential expression and co-expression analyses. The model includes subject-level random effects to account for the hierarchical structure in multi-subject single-cell data. See He et al. (2021) <doi:10.1038/s42003-021-02146-6>.
Downloads
531
Last 30 days
7069th
531
Last 90 days
531
Last year
CRAN Check Status
1
ERROR
2
NOTE
11
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Package required but not available: ‘SingleCellExperiment’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 29.4Mb
sub-directories of 1Mb or more:
libs 27.8Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 31.0Mb
sub-directories of 1Mb or more:
libs 29.3Mb
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Package required but not available: ‘SingleCellExperiment’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 29.4Mb
sub-directories of 1Mb or more:
libs 27.8Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 31.0Mb
sub-directories of 1Mb or more:
libs 29.3Mb
Dependency Network
Version History
new
1.5.6
Mar 9, 2026