mineCitrus
Extract and Analyze Median Molecule Intensity from 'citrus' Output
Description
Citrus is a computational technique developed for the analysis of high dimensional cytometry data sets. This package extracts, statistically analyzes, and visualizes marker expression from 'citrus' data. This code was used to generate data for Figures 3 and 4 in the forthcoming manuscript: Throm et al. “Identification of Enhanced Interferon-Gamma Signaling in Polyarticular Juvenile Idiopathic Arthritis with Mass Cytometry”, JCI-Insight. For more information on Citrus, please see: Bruggner et al. (2014) <doi:10.1073/pnas.1408792111>. To download the 'citrus' package, please see <https://github.com/nolanlab/citrus>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (4 non-OK)
CRAN incoming feasibility
Maintainer: ‘Allison Throm <throm@wustl.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Allison",
family = "Throm",
role = c("aut", "cre"),
email = "throm@wustl.edu")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Allison Throm <throm@wustl.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Allison",
family = "Throm",
role = c("aut", "cre"),
email = "throm@wustl.edu")
as necessary.
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.5Mb
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.5Mb
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Allison Throm <throm@wustl.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Allison",
family = "Throm",
role = c("aut", "cre"),
email = "throm@wustl.edu")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Allison Throm <throm@wustl.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Allison",
family = "Throm",
role = c("aut", "cre"),
email = "throm@wustl.edu")
as necessary.
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.5Mb
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.5Mb