markerpen
Marker Gene Detection via Penalized Principal Component Analysis
v0.1.2
·
Dec 14, 2025
·
GPL
Description
Implementation of the 'MarkerPen' algorithm, short for marker gene detection via penalized principal component analysis, described in the paper by Qiu, Wang, Lei, and Roeder (2021, <doi:10.1093/bioinformatics/btab257>). 'MarkerPen' is a semi-supervised algorithm for detecting marker genes by combining prior marker information with bulk transcriptome data.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
OK
r-devel-linux-x86_64-debian-clang
*
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 18.3Mb
sub-directories of 1Mb or more:
examples 2.7Mb
libs 14.4Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 19.0Mb
sub-directories of 1Mb or more:
examples 2.7Mb
libs 15.0Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 5.1Mb
sub-directories of 1Mb or more:
examples 2.7Mb
libs 1.3Mb
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 18.3Mb
sub-directories of 1Mb or more:
examples 2.7Mb
libs 14.4Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 19.0Mb
sub-directories of 1Mb or more:
examples 2.7Mb
libs 15.0Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 5.1Mb
sub-directories of 1Mb or more:
examples 2.7Mb
libs 1.3Mb
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Version History
new
0.1.2
Mar 9, 2026