longreadvqs
Viral Quasispecies Comparison from Long-Read Sequencing Data
v0.1.4
·
Oct 20, 2025
·
GPL-3
Description
Performs variety of viral quasispecies diversity analyses [see Pamornchainavakul et al. (2024) <doi:10.21203/rs.3.rs-4637890/v1>] based on long-read sequence alignment. Main functions include 1) sequencing error and other noise minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | ERROR |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Packages required but not available: 'Biostrings', 'pwalign', 'QSutils' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
OK
r-oldrel-macos-arm64
*
ERROR
r-oldrel-macos-x86_64
package dependencies
Packages required but not available: 'pwalign', 'QSutils' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Packages required but not available: 'Biostrings', 'pwalign', 'QSutils' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
ERROR
r-oldrel-macos-x86_64
package dependencies
Packages required but not available: 'pwalign', 'QSutils' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
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Version History
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0.1.4
Mar 9, 2026