locuszoomr
Gene Locus Plot with Gene Annotations
Description
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots <doi:10.1093/bioadv/vbaf006>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
package dependencies
Packages required but not available: 'ensembldb', 'rtracklayer' Packages suggested but not available for checking: 'AnnotationHub', 'EnsDb.Hsapiens.v75' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
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package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
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Check History
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
package dependencies
Packages required but not available: 'ensembldb', 'rtracklayer' Packages suggested but not available for checking: 'AnnotationHub', 'EnsDb.Hsapiens.v75' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
package dependencies
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’