karyotapR

Description

Analysis of DNA copy number in single cells using custom genome-wide targeted DNA sequencing panels for the Mission Bio Tapestri platform. Users can easily parse, manipulate, and visualize datasets produced from the automated 'Tapestri Pipeline', with support for normalization, clustering, and copy number calling. Functions are also available to deconvolute multiplexed samples by genotype and parsing barcoded reads from exogenous lentiviral constructs.

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CRAN Check Status

Packages required but not available:
  'SingleCellExperiment', 'SummarizedExperiment'

Packages suggested but not available for checking:
  'Biostrings', 'Rsamtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

Namespace in Imports field not imported from: ‘GenomeInfoDb’
  All declared Imports should be used.

Namespace in Imports field not imported from: ‘GenomeInfoDb’
  All declared Imports should be used.

Check History

Packages required but not available:
  'SingleCellExperiment', 'SummarizedExperiment'

Packages suggested but not available for checking:
  'Biostrings', 'Rsamtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

Namespace in Imports field not imported from: ‘GenomeInfoDb’
  All declared Imports should be used.

Namespace in Imports field not imported from: ‘GenomeInfoDb’
  All declared Imports should be used.

Dependency Network

Version History