jlmerclusterperm
Cluster-Based Permutation Analysis for Densely Sampled Time Data
Description
An implementation of fast cluster-based permutation analysis (CPA) for densely-sampled time data developed in Maris & Oostenveld, 2007 <doi:10.1016/j.jneumeth.2007.03.024>. Supports (generalized, mixed-effects) regression models for the calculation of timewise statistics. Provides both a wholesale and a piecemeal interface to the CPA procedure with an emphasis on interpretability and diagnostics. Integrates 'Julia' libraries 'MixedModels.jl' and 'GLM.jl' for performance improvements, with additional functionalities for interfacing with 'Julia' from 'R' powered by the 'JuliaConnectoR' package.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | ERROR |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | ERROR |
Check details (14 non-OK)
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examples
Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:
> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
>
> ### ** Examples
>
> ## Don't show:
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
>
>
>
> cleanEx()
Error: connections left open:
->localhost:11980 (sockconn)
Execution halted
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*
examples
Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:
> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
>
> ### ** Examples
>
> ## Don't show:
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
>
>
>
> cleanEx()
Error: connections left open:
->localhost:11980 (sockconn)
Execution halted
*
*
*
*
examples
Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:
> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
>
> ### ** Examples
>
> ## Don't show:
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
>
>
>
> cleanEx()
Error: connections left open:
->localhost:11980 (sockconn)
Execution halted
Check History
ERROR 11 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 9, 2026
examples
Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:
> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
>
> ### ** Examples
>
> ## Don't show:
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
>
examples
Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:
> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
>
> ### ** Examples
>
> ## Don't show:
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
>
examples
Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:
> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
>
> ### ** Examples
>
> ## Don't show:
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
>