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ipd

Inference on Predicted Data

v0.4.0 · Mar 6, 2026 · MIT + file LICENSE

Description

Performs valid statistical inference on predicted data (IPD) using recent methods, where for a subset of the data, the outcomes have been predicted by an algorithm. Provides a wrapper function with specified defaults for the type of model and method to be used for estimation and inference. Further provides methods for tidying and summarizing results. Salerno et al., (2025) <doi:10.1093/bioinformatics/btaf055>.

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CRAN Check Status

4 NOTE
10 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 NOTE
r-release-windows-x86_64 NOTE
Check details (14 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_lhat_glm.Rd’ ‘ipd.R’ ‘logistic_get_stats.Rd’ ‘ols_get_stats.Rd’
    ‘postpi_analytic_ols.Rd’ ‘postpi_boot_logistic.Rd’
    ‘postpi_boot_ols.Rd’ ‘ppi_logistic.Rd’ ‘ppi_mean.Rd’ ‘ppi_ols.R’
    ‘ppi_ols.Rd’ ‘ppi_plusplus_logistic.Rd’
    ‘ppi_plusplus_logistic_est.Rd’ ‘ppi_plusplus_mean.Rd’
    ‘ppi_plusplus_mean_est.Rd’ ‘ppi_plusplus_ols.Rd’
    ‘ppi_plusplus_ols_est.Rd’ ‘ppi_plusplus_quantile.Rd’
    ‘ppi_plusplus_quantile_est.Rd’ ‘ppi_quantile.Rd’ ‘pspa_logistic.Rd’
    ‘pspa_mean.Rd’ ‘pspa_ols.Rd’ ‘pspa_poisson.Rd’ ‘pspa_quantile.Rd’
    ‘simdat.R’
OK r-devel-linux-x86_64-debian-gcc

*


            
OK r-devel-linux-x86_64-fedora-clang

*


            
OK r-devel-linux-x86_64-fedora-gcc

*


            
OK r-devel-macos-arm64

*


            
OK r-devel-windows-x86_64

*


            
OK r-oldrel-macos-arm64

*


            
OK r-oldrel-macos-x86_64

*


            
OK r-oldrel-windows-x86_64

*


            
NOTE r-patched-linux-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_lhat_glm.Rd’ ‘ipd.R’ ‘logistic_get_stats.Rd’ ‘ols_get_stats.Rd’
    ‘postpi_analytic_ols.Rd’ ‘postpi_boot_logistic.Rd’
    ‘postpi_boot_ols.Rd’ ‘ppi_logistic.Rd’ ‘ppi_mean.Rd’ ‘ppi_ols.R’
    ‘ppi_ols.Rd’ ‘ppi_plusplus_logistic.Rd’
    ‘ppi_plusplus_logistic_est.Rd’ ‘ppi_plusplus_mean.Rd’
    ‘ppi_plusplus_mean_est.Rd’ ‘ppi_plusplus_ols.Rd’
    ‘ppi_plusplus_ols_est.Rd’ ‘ppi_plusplus_quantile.Rd’
    ‘ppi_plusplus_quantile_est.Rd’ ‘ppi_quantile.Rd’ ‘pspa_logistic.Rd’
    ‘pspa_mean.Rd’ ‘pspa_ols.Rd’ ‘pspa_poisson.Rd’ ‘pspa_quantile.Rd’
    ‘simdat.R’
OK r-release-linux-x86_64

*


            
OK r-release-macos-arm64

*


            
NOTE r-release-macos-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ipd.R’ ‘ppi_ols.R’ ‘simdat.R’
NOTE r-release-windows-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'calc_lhat_glm.Rd' 'ipd.R' 'logistic_get_stats.Rd' 'ols_get_stats.Rd'
    'postpi_analytic_ols.Rd' 'postpi_boot_logistic.Rd'
    'postpi_boot_ols.Rd' 'ppi_logistic.Rd' 'ppi_mean.Rd' 'ppi_ols.R'
    'ppi_ols.Rd' 'ppi_plusplus_logistic.Rd'
    'ppi_plusplus_logistic_est.Rd' 'ppi_plusplus_mean.Rd'
    'ppi_plusplus_mean_est.Rd' 'ppi_plusplus_ols.Rd'
    'ppi_plusplus_ols_est.Rd' 'ppi_plusplus_quantile.Rd'
    'ppi_plusplus_quantile_est.Rd' 'ppi_quantile.Rd' 'pspa_logistic.Rd'
    'pspa_mean.Rd' 'pspa_ols.Rd' 'pspa_poisson.Rd' 'pspa_quantile.Rd'
    'simdat.R'

Check History

NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_lhat_glm.Rd’ ‘ipd.R’ ‘logistic_get_stats.Rd’ ‘ols_get_stats.Rd’
    ‘postpi_analytic_ols.Rd’ ‘postpi_boot_logistic.Rd’
    ‘postpi_boot_ols.Rd’ ‘ppi_logistic.Rd’ ‘ppi_mean.Rd’ ‘ppi_ols.R’
    ‘ppi_ols.Rd’ ‘ppi_plusplus_logistic.Rd’
    ‘ppi_plusplus_logistic_est.Rd’ ‘ppi_plusplus_mean.Rd’
    ‘ppi_plusplus_mean_est.Rd’ ‘ppi_pluspl
NOTE r-patched-linux-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_lhat_glm.Rd’ ‘ipd.R’ ‘logistic_get_stats.Rd’ ‘ols_get_stats.Rd’
    ‘postpi_analytic_ols.Rd’ ‘postpi_boot_logistic.Rd’
    ‘postpi_boot_ols.Rd’ ‘ppi_logistic.Rd’ ‘ppi_mean.Rd’ ‘ppi_ols.R’
    ‘ppi_ols.Rd’ ‘ppi_plusplus_logistic.Rd’
    ‘ppi_plusplus_logistic_est.Rd’ ‘ppi_plusplus_mean.Rd’
    ‘ppi_plusplus_mean_est.Rd’ ‘ppi_pluspl
NOTE r-release-macos-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ipd.R’ ‘ppi_ols.R’ ‘simdat.R’
NOTE r-release-windows-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'calc_lhat_glm.Rd' 'ipd.R' 'logistic_get_stats.Rd' 'ols_get_stats.Rd'
    'postpi_analytic_ols.Rd' 'postpi_boot_logistic.Rd'
    'postpi_boot_ols.Rd' 'ppi_logistic.Rd' 'ppi_mean.Rd' 'ppi_ols.R'
    'ppi_ols.Rd' 'ppi_plusplus_logistic.Rd'
    'ppi_plusplus_logistic_est.Rd' 'ppi_plusplus_mean.Rd'
    'ppi_plusplus_mean_est.Rd' 'ppi_pluspl

Dependency Network

Dependencies Reverse dependencies generics BiocGenerics caret gam ranger MASS randomForest tibble ipd

Version History

new 0.4.0 Mar 9, 2026