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inlamemi

Missing Data and Measurement Error Modelling in INLA

v1.1.0 · Oct 31, 2024 · MIT + file LICENSE
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Description

Facilitates fitting measurement error and missing data imputation models using integrated nested Laplace approximations, according to the method described in Skarstein, Martino and Muff (2023) <doi:10.1002/bimj.202300078>. See Skarstein and Muff (2024) <doi:10.48550/arXiv.2406.08172> for details on using the package.

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CRAN Check Status

1 ERROR
13 NOTE
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 NOTE
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 NOTE
r-release-macos-arm64 NOTE
r-release-macos-x86_64 NOTE
r-release-windows-x86_64 NOTE
Check details (14 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-linux-x86_64-debian-gcc

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-linux-x86_64-fedora-clang

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-linux-x86_64-fedora-gcc

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-macos-arm64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-windows-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'plot_functions.R'
NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘INLA’
NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘INLA’
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'building_models_without_inlamemi.Rmd' using rmarkdown
--- finished re-building 'building_models_without_inlamemi.Rmd'

--- re-building 'framingham_heart_study.Rmd' using rmarkdown
File figure/unnamed-chunk-6-1.png not found in resource path
Error: processing vignette 'framingham_heart_study.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'framingham_heart_study.Rmd'

--- re-building 'modifying_default_plot.Rmd' using rmarkdown
File figure/unnamed-chunk-3-1.png not found in resource path
Error: processing vignette 'modifying_default_plot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'modifying_default_plot.Rmd'

--- re-building 'multiple_error_variables.Rmd' using rmarkdown
File figure/unnamed-chunk-8-1.png not found in resource path
Error: processing vignette 'multiple_error_variables.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'multiple_error_variables.Rmd'

--- re-building 'nhanes_survival_model.Rmd' using rmarkdown
File figure/unnamed-chunk-5-1.png not found in resource path
Error: processing vignette 'nhanes_survival_model.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'nhanes_survival_model.Rmd'

--- re-building 'simulated_examples.Rmd' using rmarkdown
File figure/unnamed-chunk-4-1.png not found in resource path
Error: processing vignette 'simulated_examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'simulated_examples.Rmd'

--- re-building 'visualize_model_structure.Rmd' using rmarkdown
--- finished re-building 'visualize_model_structure.Rmd'

SUMMARY: processing the following files failed:
  'framingham_heart_study.Rmd' 'modifying_default_plot.Rmd'
  'multiple_error_variables.Rmd' 'nhanes_survival_model.Rmd'
  'simulated_examples.Rmd'

Error: Vignette re-building failed.
Execution halted
NOTE r-patched-linux-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-release-linux-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-release-macos-arm64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-release-macos-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-release-windows-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'plot_functions.R'

Check History

ERROR 0 OK · 13 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-linux-x86_64-debian-gcc

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-linux-x86_64-fedora-clang

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-linux-x86_64-fedora-gcc

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-macos-arm64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-devel-windows-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'plot_functions.R'
NOTE r-patched-linux-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-release-linux-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-release-macos-arm64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-release-macos-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
NOTE r-release-windows-x86_64

DESCRIPTION meta-information

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'plot_functions.R'
NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘INLA’
NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘INLA’
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'building_models_without_inlamemi.Rmd' using rmarkdown
--- finished re-building 'building_models_without_inlamemi.Rmd'

--- re-building 'framingham_heart_study.Rmd' using rmarkdown
File figure/unnamed-chunk-6-1.png not found in resource path
Error: processing vignette 'framingham_heart_study.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'framingham_heart_study.Rmd'

--- re-building 'modifyin

Dependency Network

Dependencies Reverse dependencies dplyr ggplot2 rlang scales inlamemi

Version History

new 1.1.0 Mar 9, 2026