iC10TrainingData
Training Datasets for iC10 Package
Description
Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
CRAN incoming feasibility
Maintainer: ‘Oscar M. Rueda <Oscar.Rueda@mrc-bsu.cam.ac.uk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Oscar", "M"),
family = "Rueda",
role = "aut"),
person(given = c("Jose", "Antonio", "Seoane"),
family = "Fernandez",
role = "aut"),
person(given = c("Oscar", "M."),
family = "Rueda",
role = "cre",
email = "Oscar.Rueda@mrc-bsu.cam.ac.uk"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Oscar M. Rueda <Oscar.Rueda@mrc-bsu.cam.ac.uk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Oscar", "M"),
family = "Rueda",
role = "aut"),
person(given = c("Jose", "Antonio", "Seoane"),
family = "Fernandez",
role = "aut"),
person(given = c("Oscar", "M."),
family = "Rueda",
role = "cre",
email = "Oscar.Rueda@mrc-bsu.cam.ac.uk"))
as necessary.
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installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 5.6Mb
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 5.6Mb
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.6Mb
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Check History
NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
CRAN incoming feasibility
Maintainer: ‘Oscar M. Rueda <Oscar.Rueda@mrc-bsu.cam.ac.uk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Oscar", "M"),
family = "Rueda",
role = "aut"),
person(given = c("Jose", "Antonio", "Seoane"),
family = "Fernandez",
role = "aut"),
person(given = c("Oscar", "M."),
family = "Rueda",
CRAN incoming feasibility
Maintainer: ‘Oscar M. Rueda <Oscar.Rueda@mrc-bsu.cam.ac.uk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Oscar", "M"),
family = "Rueda",
role = "aut"),
person(given = c("Jose", "Antonio", "Seoane"),
family = "Fernandez",
role = "aut"),
person(given = c("Oscar", "M."),
family = "Rueda",
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 5.6Mb
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 5.6Mb
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.6Mb