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hicream

HIC diffeREntial Analysis Method

v0.0.4 · Jan 30, 2026 · GPL (>= 3)

Description

Perform Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

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CRAN Check Status

5 ERROR
9 OK
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r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 ERROR
r-oldrel-macos-x86_64 ERROR
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 ERROR
r-release-macos-x86_64 ERROR
r-release-windows-x86_64 OK
Check details (14 non-OK)
ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available:
  'csaw', 'diffHic', 'InteractionSet', 'SummarizedExperiment'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK r-devel-linux-x86_64-debian-gcc

*


            
OK r-devel-linux-x86_64-fedora-clang

*


            
OK r-devel-linux-x86_64-fedora-gcc

*


            
OK r-devel-macos-arm64

*


            
OK r-devel-windows-x86_64

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ERROR r-oldrel-macos-arm64

package dependencies

Packages required but not available: 'csaw', 'diffHic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-oldrel-macos-x86_64

package dependencies

Package required but not available: ‘diffHic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK r-oldrel-windows-x86_64

*


            
OK r-patched-linux-x86_64

*


            
OK r-release-linux-x86_64

*


            
ERROR r-release-macos-arm64

package dependencies

Package required but not available: ‘diffHic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-release-macos-x86_64

package dependencies

Package required but not available: ‘diffHic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK r-release-windows-x86_64

*


            

Check History

ERROR 9 OK · 0 NOTE · 0 WARNING · 5 ERROR · 0 FAILURE Mar 9, 2026
ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available:
  'csaw', 'diffHic', 'InteractionSet', 'SummarizedExperiment'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-release-macos-arm64

package dependencies

Package required but not available: ‘diffHic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-release-macos-x86_64

package dependencies

Package required but not available: ‘diffHic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-oldrel-macos-arm64

package dependencies

Packages required but not available: 'csaw', 'diffHic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
ERROR r-oldrel-macos-x86_64

package dependencies

Package required but not available: ‘diffHic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

Dependency Network

Dependencies Reverse dependencies reticulate adjclust auk BiocGenerics csaw diffHic dplyr edgeR GenomeInfoDb GenomicRanges InteractionSet limma Matrix reshape2 rlang +3 more dependencies hicream

Version History

new 0.0.4 Mar 9, 2026