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An Extensible Approach to Flux Balance Analysis
Description
A toolkit for Flux Balance Analysis and related metabolic modeling techniques. Functions are provided for: parsing models in tabular format, converting parsed metabolic models to input formats for common linear programming solvers, and evaluating and applying gene-protein-reaction mappings. In addition, there are wrappers to parse a model, select a solver, find the metabolic fluxes, and return the results applied to the original model. Compared to other packages in this field, this package puts a much heavier focus on providing reusable components that can be used in the design of new implementation of new techniques, in particular those that involve large parameter sweeps. For a background on the theory, see What is Flux Balance Analysis <doi:10.1038/nbt.1614>.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | NOTE |
Check details (14 non-OK)
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
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get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
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get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
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get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
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R code for possible problems
get_BiGG: no visible binding for global variable 'id' Undefined global functions or variables: id
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R code for possible problems
get_BiGG: no visible binding for global variable 'id' Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
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R code for possible problems
get_BiGG: no visible binding for global variable 'id' Undefined global functions or variables: id
Check History
NOTE 5 OK · 9 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable 'id' Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable ‘id’ Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable 'id' Undefined global functions or variables: id
R code for possible problems
get_BiGG: no visible binding for global variable 'id' Undefined global functions or variables: id