epiparameter

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tests

  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [42s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > # nolint start
  > library(testthat)
  > library(epiparameter)
  > # nolint end
  > 
  > test_check("epiparameter")
  Citation cannot be created as author, year, journal or title is missing
  Saving _problems/test-extract_param-266.R
  Returning 4 results that match the criteria (4 are parameterised). 
  Use subset to filter by entry variables or single_epiparameter to return a single entry. 
  To retrieve the citation for each use the 'get_citation' function
  Returning 3 results that match the criteria (3 are parameterised). 
  Use subset to filter by entry variables or single_epiparameter to return a single entry. 
  To retrieve the citation for each use the 'get_citation' function
  [ FAIL 1 | WARN 2 | SKIP 30 | PASS 523 ]
  
  ══ Skipped tests (30) ══════════════════════════════════════════════════════════
  • On CRAN (23): 'test-convert_params.R:13:1', 'test-convert_params.R:53:1',
    'test-convert_params.R:114:1', 'test-convert_params.R:144:1',
    'test-epiparameter.R:176:1', 'test-epiparameter.R:197:1',
    'test-epiparameter.R:219:1', 'test-extract_param.R:294:3',
    'test-extract_param.R:363:3', 'test-parameter_tbl.R:4:1',
    'test-parameter_tbl.R:16:1', 'test-parameter_tbl.R:31:1',
    'test-parameter_tbl.R:46:1', 'test-parameter_tbl.R:61:1',
    'test-parameter_tbl.R:76:1', 'test-parameter_tbl.R:92:1',
    'test-parameter_tbl.R:105:1', 'test-parameter_tbl.R:118:1',
    'test-plot.R:1:1', 'test-print.R:4:1', 'test-print.R:9:1',
    'test-print.R:16:1', 'test-print.R:27:1'
  • {epireview} is not installed (7): 'test-coercion.R:13:3',
    'test-coercion.R:39:3', 'test-coercion.R:63:3', 'test-coercion.R:88:3',
    'test-coercion.R:114:3', 'test-coercion.R:140:3', 'test-coercion.R:169:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-extract_param.R:256:3'): .extract_param works for lnorm percentiles ──
  Expected `lnorm_params` to equal `list(...)`.
  Differences:
    `actual$convergence`: 52.0
  `expected$convergence`:  0.0
  
  `actual$message`:   "ERROR: ABNORMAL_TERMINATION_IN_LNSRCH"           
  `expected$message`: "CONVERGENCE: NORM OF PROJECTED GRADIENT <= PGTOL"
  
  
  [ FAIL 1 | WARN 2 | SKIP 30 | PASS 523 ]
  Error:
  ! Test failures.
  Execution halted

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