epinetr

0.96

Epistatic Network Modelling with Forward-Time Simulation

0packages depend

3.3Kdownloads / year

55.7%test coverage

0/13checks pass

Overview

About

Maintained by Dion DettererFirst published 2020-11-044 releasesCRAN page ↗GitHub ↗

Allows for forward-in-time simulation of epistatic networks with associated phenotypic output.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("epinetr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("diondetterer/epinetr")

Development version from diondetterer/epinetr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epinetr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-epinetr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 6.4 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.14

55.7%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-04-22
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
0 OK · 13 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 332 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 78%
Documented parameters: 100%
Return-value docs: 85%
References docs: 4%

Downloads

3.3K

CRAN downloads in the past year

Rank #12,172 · ~9/day · ~278/mo

Releases R versions

Daily download trend is not available in this view yet.

31230 days

87790 days

3.3K1 year

Compare downloads with other packages →

Also on404 r2u

Repository

GitHub ↗ diondetterer/epinetr

0Stars

1Forks

1Open issues

0Open PRs

0Releases

32Commits

1Contributors

License GPL-3.0 · 32 commits · Last activity 2022-03-10

Forks over time

2026-01-09 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/diondetterer/epinetr on 2026-07-19.

Continuous integration (1)

Travis CI

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (8)

GA ggplot2 igraphmethodsRcpp RcppAlgos reshape2 vcfR

LinkingTo (1)

Rcpp

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Dion Detterer

Author, Maintainer

Authors (3)

Dion Detterer

Author, Maintainer

Cedric Gondro

Author

Paul Kwan

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.96Latest
2022-03-10 · current release · diff ↗
0.95
2021-11-09 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.94
2021-01-10 · diff ↗
0.93
2020-11-04
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-11-04
Total releases: 4 / 6 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 14 KB / 3 files
Download size: 550 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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