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doolkit

Exploration of Dental Surface Topography

v1.42.2 · Feb 6, 2023 · GPL-3

Description

Tools for exploring the topography of 3d triangle meshes. The functions were developed with dental surfaces in mind, but could be applied to any triangle mesh of class 'mesh3d'. More specifically, 'doolkit' allows to isolate the border of a mesh, or a subpart of the mesh using the polygon networks method; crop a mesh; compute basic descriptors (elevation, orientation, footprint area); compute slope, angularity and relief index (Ungar and Williamson (2000) <https://palaeo-electronica.org/2000_1/gorilla/issue1_00.htm>; Boyer (2008) <doi:10.1016/j.jhevol.2008.08.002>), inclination and occlusal relief index or gamma (Guy et al. (2013) <doi:10.1371/journal.pone.0066142>), OPC (Evans et al. (2007) <doi:10.1038/nature05433>), OPCR (Wilson et al. (2012) <doi:10.1038/nature10880>), DNE (Bunn et al. (2011) <doi:10.1002/ajpa.21489>; Pampush et al. (2016) <doi:10.1007/s10914-016-9326-0>), form factor (Horton (1932) <doi:10.1029/TR013i001p00350>), basin elongation (Schum (1956) <doi:10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2>), lemniscate ratio (Chorley et al; (1957) <doi:10.2475/ajs.255.2.138>), enamel-dentine distance (Guy et al. (2015) <doi:10.1371/journal.pone.0138802>; Thiery et al. (2017) <doi:10.3389/fphys.2017.00524>), absolute crown strength (Schwartz et al. (2020) <doi:10.1098/rsbl.2019.0671>), relief rate (Thiery et al. (2019) <doi:10.1002/ajpa.23916>) and area-relative curvature; draw cumulative profiles of a topographic variable; and map a variable over a 3d triangle mesh.

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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 NOTE
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 ERROR
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 NOTE
r-release-macos-arm64 ERROR
r-release-macos-x86_64 ERROR
r-release-windows-x86_64 NOTE
Check details (20 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    R         3.0Mb
    data      2.0Mb
    extdata   2.3Mb
NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
ERROR r-oldrel-macos-x86_64

examples

Running examples in ‘doolkit-Ex.R’ failed
The error most likely occurred in:

> ### Name: dkcrop
> ### Title: crop a mesh
> ### Aliases: dkcrop
> 
> ### ** Examples
> 
> #Crop above a certain threshold:
> mythreshold <- quantile(elev(dkmodel$basin), 0.5)
> mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin),
+ lwr.limit = mythreshold)
> mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork)
> dkmap(mynewmesh, elev(mynewmesh))
> 
> #Crop the sharpest dental elements:
> sharpmesh <- dkcrop(dkmodel$basin, poly.network(dkmodel$basin,
+ Rvcg::vcgCurve(dkmodel$basin)$meanitmax,
+ lwr.limit = quantile(Rvcg::vcgCurve(dkmodel$basin)$meanitmax, 0.8),
+ min.size = 50))
> dkmap(sharpmesh, arc(sharpmesh), col = "arc", col.levels = 20,
+ min.range = -20, max.range = 20)
> #Map of the sharpest elements' elevation, slope and orientation;
> dkmap(sharpmesh, elev(sharpmesh), col = "elev")

 *** caught segfault ***
address 0x3b4550be85a8, cause 'memory not mapped'

Traceback:
 1: plot.xy(xy, type, ...)
 2: plot.default(x = plotx, y = ploty, pch = 95, bty = "n", xaxs = "r",     xaxt = "n", col = c("transparent", rep(Colpalette, each = 100)),     xlab = "", ylab = legend.lab, main = main, sub = sub, col.main = col.main,     col.axis = col.axis, col.lab = col.lab, col.sub = col.sub,     cex = cex, cex.main = cex.main, cex.axis = cex.axis, cex.sub = cex.sub,     cex.lab = cex.lab, family = family, font.main = font.main,     font.axis = font.axis)
 3: graphics::plot(x = plotx, y = ploty, pch = 95, bty = "n", xaxs = "r",     xaxt = "n", col = c("transparent", rep(Colpalette, each = 100)),     xlab = "", ylab = legend.lab, main = main, sub = sub, col.main = col.main,     col.axis = col.axis, col.lab = col.lab, col.sub = col.sub,     cex = cex, cex.main = cex.main, cex.axis = cex.axis, cex.sub = cex.sub,     cex.lab = cex.lab, family = family, font.main = font.main,     font.axis = font.axis)
 4: bg.make()
 5: doTryCatch(return(expr), name, parentenv, handler)
 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7: tryCatchList(expr, classes, parentenv, handlers)
 8: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))             call <- sys.call(-4L)        dcall <- deparse(call, nlines = 1L)        prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        sm <- strsplit(conditionMessage(e), "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],                 type = "b")        if (w > LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")    .Internal(seterrmessage(msg[1L]))    if (!silent && isTRUE(getOption("show.error.messages"))) {        cat(msg, file = outFile)        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error", condition = e))})
 9: try(expression)
10: rgl::bgplot3d(bg.make())
11: dkmap(sharpmesh, elev(sharpmesh), col = "elev")
An irrecoverable exception occurred. R is aborting now ...
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  8.4Mb
  sub-directories of 1Mb or more:
    R         3.0Mb
    data      3.0Mb
    extdata   2.3Mb
NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  6.3Mb
  sub-directories of 1Mb or more:
    R         1.9Mb
    data      1.9Mb
    extdata   2.3Mb
NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
NOTE r-release-macos-arm64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
ERROR r-release-macos-arm64

examples

Running examples in ‘doolkit-Ex.R’ failed
The error most likely occurred in:

> ### Name: dkcrop
> ### Title: crop a mesh
> ### Aliases: dkcrop
> 
> ### ** Examples
> 
> #Crop above a certain threshold:
> mythreshold <- quantile(elev(dkmodel$basin), 0.5)
> mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin),
+ lwr.limit = mythreshold)
> mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork)
> dkmap(mynewmesh, elev(mynewmesh))
NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
ERROR r-release-macos-x86_64

examples

Running examples in ‘doolkit-Ex.R’ failed
The error most likely occurred in:

> ### Name: dkcrop
> ### Title: crop a mesh
> ### Aliases: dkcrop
> 
> ### ** Examples
> 
> #Crop above a certain threshold:
> mythreshold <- quantile(elev(dkmodel$basin), 0.5)
> mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin),
+ lwr.limit = mythreshold)
> mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork)
> dkmap(mynewmesh, elev(mynewmesh))
NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^

Check History

ERROR 0 OK · 11 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
ERROR r-release-macos-arm64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
ERROR r-release-macos-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{G
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    R         3.0Mb
    data      2.0Mb
    extdata   2.3Mb
ERROR r-oldrel-macos-x86_64

installed package size

  installed size is  8.4Mb
  sub-directories of 1Mb or more:
    R         3.0Mb
    data      3.0Mb
    extdata   2.3Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  6.3Mb
  sub-directories of 1Mb or more:
    R         1.9Mb
    data      1.9Mb
    extdata   2.3Mb

Dependency Network

Dependencies Reverse dependencies ggplot2 igraph Morpho rgl Rvcg sp MASS tis concaveman usethis doolkit

Version History

new 1.42.2 Mar 9, 2026