coreCT
Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging
v1.3.3
·
Feb 5, 2021
·
GPL-3
Description
Computed tomography (CT) imaging is a powerful tool for understanding the composition of sediment cores. This package streamlines and accelerates the analysis of CT data generated in the context of environmental science. Included are tools for processing raw DICOM images to characterize sediment composition (sand, peat, etc.). Root analyses are also enabled, including measures of external surface area and volumes for user-defined root size classes. For a detailed description of the application of computed tomography imaging for sediment characterization, see: Davey, E., C. Wigand, R. Johnson, K. Sundberg, J. Morris, and C. Roman. (2011) <DOI: 10.1890/10-2037.1>.
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NOTE
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (14 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) getSurface.Rd:22: Lost braces
22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
| ^
Dependency Network
Version History
new
1.3.3
Mar 9, 2026