confSAM

Estimates and Bounds for the False Discovery Proportion, by Permutation

v0.2 · Feb 19, 2018 · GNU General Public License

Description

For multiple testing. Computes estimates and confidence bounds for the False Discovery Proportion (FDP), the fraction of false positives among all rejected hypotheses. The methods in the package use permutations of the data. Doing so, they take into account the dependence structure in the data.

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5 NOTE

9 OK

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	26.4s
r-devel-linux-x86_64-debian-gcc	NOTE	20.4s
r-devel-linux-x86_64-fedora-clang	OK	39.8s
r-devel-linux-x86_64-fedora-gcc	OK	126.7s
r-devel-macos-arm64	OK	25s
r-devel-windows-x86_64	OK	45s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	69s
r-oldrel-windows-x86_64	NOTE	54s
r-patched-linux-x86_64	OK	23.5s
r-release-linux-x86_64	OK	23.2s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	90s
r-release-windows-x86_64	OK	45s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Jesse Hemerik <j.b.a.hemerik@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "j.b.a.hemerik@lumc.nl"),
               person(given = "Jelle",
                      family = "Goeman",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Jesse Hemerik <j.b.a.hemerik@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "j.b.a.hemerik@lumc.nl"),
               person(given = "Jelle",
                      family = "Goeman",
                      role = "aut"))
as necessary.

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

NOTE r-oldrel-macos-arm64

LazyData

  'LazyData' is specified without a 'data' directory

NOTE r-oldrel-macos-x86_64

LazyData

  'LazyData' is specified without a 'data' directory

NOTE r-oldrel-windows-x86_64

LazyData

  'LazyData' is specified without a 'data' directory

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Jesse Hemerik <j.b.a.hemerik@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "j.b.a.hemerik@lumc.nl"),
               person(given = "Jelle",
                      family = "Goeman",
                      role = "aut"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Jesse Hemerik <j.b.a.hemerik@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "j.b.a.hemerik@lumc.nl"),
               person(given = "Jelle",
                      family = "Goeman",
                      role = "aut"))
as necessary.

NOTE r-oldrel-macos-arm64

LazyData

  'LazyData' is specified without a 'data' directory

NOTE r-oldrel-macos-x86_64

LazyData

  'LazyData' is specified without a 'data' directory

NOTE r-oldrel-windows-x86_64

LazyData

  'LazyData' is specified without a 'data' directory

Version History

new 0.2 Mar 9, 2026