clustTMB

Spatio-Temporal Finite Mixture Model using 'TMB'

v0.1.0 · Oct 14, 2024 · GPL-3

Description

Fits a spatio-temporal finite mixture model using 'TMB'. Covariate, spatial and temporal random effects can be incorporated into the gating formula using multinomial logistic regression, the expert formula using a generalized linear mixed model framework, or both.

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CRAN Check Status

2 ERROR

2 NOTE

10 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	1327.6s
r-devel-linux-x86_64-debian-gcc	OK	1008.7s
r-devel-linux-x86_64-fedora-clang	ERROR	7425.6s
r-devel-linux-x86_64-fedora-gcc	ERROR	2471.4s
r-devel-macos-arm64	OK	282s
r-devel-windows-x86_64	OK	943s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	485s
r-oldrel-windows-x86_64	OK	1100s
r-patched-linux-x86_64	OK	1431.8s
r-release-linux-x86_64	OK	1417.9s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	689s
r-release-windows-x86_64	OK	951s

Check details (14 non-OK)

OK r-devel-linux-x86_64-debian-clang

OK r-devel-linux-x86_64-debian-gcc

ERROR r-devel-linux-x86_64-fedora-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘CovarianceStructure.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘CovarianceStructure.Rmd’

--- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
SUMMARY: processing the following file failed:
  ‘SpatialExMeuseData.Rmd’

Error: Vignette re-building failed.
Execution halted

ERROR r-devel-linux-x86_64-fedora-gcc

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘CovarianceStructure.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘CovarianceStructure.Rmd’

Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown
SUMMARY: processing the following file failed:
  ‘SpatialExMeuseData.Rmd’

Error: Vignette re-building failed.
Execution halted

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

NOTE r-oldrel-macos-arm64

installed package size

  installed size is 84.4Mb
  sub-directories of 1Mb or more:
    libs  83.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 85.6Mb
  sub-directories of 1Mb or more:
    libs  85.2Mb

OK r-oldrel-windows-x86_64

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

ERROR 10 OK · 2 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 9, 2026

ERROR r-devel-linux-x86_64-fedora-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘CovarianceStructure.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘CovarianceStructure.Rmd’

--- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
SUMMARY: process

ERROR r-devel-linux-x86_64-fedora-gcc

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘CovarianceStructure.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘CovarianceStructure.Rmd’

Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown
SUMMARY: processing the following file failed:
  ‘SpatialExMeuseData.Rmd’

Error: Vignette re-building failed.
Execution halted

NOTE r-oldrel-macos-arm64

installed package size

  installed size is 84.4Mb
  sub-directories of 1Mb or more:
    libs  83.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 85.6Mb
  sub-directories of 1Mb or more:
    libs  85.2Mb

Dependency Network

Version History

new 0.1.0 Mar 9, 2026