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Capture Hi-C Analysis Engine

v0.1.8 · Nov 6, 2021 · GPL-2
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Description

Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.

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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
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r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
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NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespaces in Imports field not imported from:
  'knitr' 'rmarkdown'
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespaces in Imports field not imported from:
  'knitr' 'rmarkdown'
  All declared Imports should be used.

Check History

NOTE 8 OK · 6 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Syed Haider <Syed.Haider@icr.ac.uk>’

Additional repositories with no packages:
  http://R-Forge.R-project.org/
NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespaces in Imports field not imported from:
  'knitr' 'rmarkdown'
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespaces in Imports field not imported from:
  'knitr' 'rmarkdown'
  All declared Imports should be used.
NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘countreg’
NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘countreg’
NOTE r-oldrel-windows-x86_64

package dependencies

Package suggested but not available for checking: 'countreg'

Dependency Network

Dependencies Reverse dependencies gamlss.tr gamlss data.table MASS foreach doParallel iterators bedr knitr rmarkdown chicane

Version History

new 0.1.8 Mar 10, 2026
updated 0.1.8 ← 0.1.7 diff Nov 5, 2021
updated 0.1.7 ← 0.1.6 diff Sep 20, 2021
updated 0.1.6 ← 0.1.5 diff Jul 24, 2021
updated 0.1.5 ← 0.1.4 diff Jun 9, 2021
updated 0.1.4 ← 0.1.3 diff Mar 23, 2021
updated 0.1.3 ← 0.1.2 diff Jan 12, 2021
updated 0.1.2 ← 0.1.1 diff Jul 27, 2020
updated 0.1.1 ← 0.1.0 diff Sep 30, 2019
new 0.1.0 Aug 29, 2018